Information
PRIGEN (PRImate GENes) is a database of chimpanzee (Pan troglodytes verus) cDNAs. The cDNA sequences were derived from full-length cDNA (FLcDNA) libraries of various tissues using the oligo-capping method. We first sequenced 5'-ends of randomly selected clones from the libraries and then started full-length sequencing. The sequences were annotated using similarity searches against NCBI human RefSeq transcripts. PRIGEN currently provides keyword and BLAST searches against 14,004 5'-end cDNA (5'-EST) sequences.
Contents
Download
Chimpanzee FLcDNAs (flcdna_90.fas.gz, 52 KB)
Sakate et al. (2007)
Osada and Wu (2005)
[Acc# AB188273-AB188288 and AB222102-AB222175, 90 sequences]
Chimpanzee 5'-ESTs (est_1947.fas.gz, 244 KB)
Sakate et al. (2003)
[Acc# AU296732-AU298678, 1,947 sequences]
References
Sakate, R., Suto, Y., Imanishi, T., Tanoue, T., Hida, M., Hayasaka, I., Kusuda, J., Gojobori, T., Hashimoto, K., and Hirai, M.
Mapping of chimpanzee full-length cDNAs onto the human genome unveils large potential divergence of the transcriptome.
Gene 399: 1-10 (2007)
Supplementary_files.tar.gz (2.4 MB)
Osada, N., and Wu, C.I.
Inferring the Mode of Speciation From Genomic Data. A Study of the Great Apes.
Genetics 169: 259-64 (2005)
Sakate, R., Osada, N., Hida, M., Sugano, S., Hayasaka, I., Shimohira, N., Yanagi, S., Suto, Y., Hashimoto, K., and Hirai, M.
Analysis of 5'-End Sequences of Chimpanzee cDNAs.
Genome Res. 13: 1022-6 (2003)
Links
Macaca fascicularis cDNA database (QFbase)
H-InvDB Evola - Ortholog database of human and other vertebrates
H-InvDB G-compass - Comparative genome browser of human and other vertebrates
Copyright © 2001-2010 by Division of Genetic Resources, National Institute of Infectious Diseases (NIID), Tokyo. All rights reserved.